Newt Editor

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Object
Map
Palette
Console

General

Name

Description

Type

Additional Compound Padding

Edge Arrow Size

Allow Compound Resize

Infer Nesting on Load

Enable Ports

Enable Topology Grouping of SIF Nodes

Highlight Style

Labels

Display Labels for Named Complexes

Adjust Node Label Font Size Automatically

Label Size

Fit Labels to Nodes

Fit Labels to Information Boxes

Arrangement

Recalculate Layout on Complexity Management

Rearrange on Complexity Management

Animate on Drawing Changes

Experiment

Open...

Color Scheme

Style

Process Description

Entity Pool Nodes

Process Nodes

Logical Operators

Other Nodes

Connecting Arcs

Activity Flow

Activity Nodes

Auxiliary Units

Logical Operators

Other Nodes

Connecting Arcs

SIF

SIF Nodes

Connecting Edges

SBML

Species

Process Nodes

Container Nodes

Logical Operators

Connecting Arcs

Validation Results

Pathway #0
PD

Process Description

Reference Card - Specifications

Activity Flow

Reference Card - Specifications

Simple Interaction Format

Systems Biology Markup Language

About

Newt Editor version 4.0.0

i-Vis Information Visualization Research Lab

Please cite: Balci et al. Newt: a comprehensive web-based tool
for viewing, constructing, and analyzing biological maps, Bioinf., 37(10), pp.1475-1477, 2021.

See here for third-party libraries used

ivisatbilkent@gmail.com

http://newteditor.org/

Quick Help

SBGN notation: Learning SBGN - Learner's Cards

SIF notation: SIF Relations

SBML notation: SBO terms mapping to CellDesigner notation

File > Samples: Open a sample model

Double-click on node: Edit label

Right-click: Context menu for associated object

Right click on selected edge: Add bend/control point for edge

Ctrl/Cmd + drag on a node: Transfer a node in and out of a complex/compartment/submap

Shift + drag: Box selection (select touched nodes and included edges)

Ctrl/Cmd + Shift + drag: Marquee zoom (zoom to marked area)

Shift + click: Add/remove an element to/from the current selection

Shift + taphold on node/edge: Select neighborhood of node/edge (involved processes for PD maps)

Alt + taphold on node/edge: Select all nodes/edges of this type

Arrow keys: Move selected nodes in arrow direction; use Shift (Alt) for faster (slower) move

Tips

Edit > Add {Complex,Compartment,Submap} for Selected: include all selected nodes inside a newly created complex or compartment or submap.

Convenient process creation: When creating a new process node, click on substrate node and drag to and release on product node.

Enable grid: Clicking on the Enable Grid tool on the toolbar shows and snaps to the grid during node dragging.

Enable guidelines: Clicking on the Enable Guidelines tool on the toolbar enables and snaps to alignment guidelines during node dragging.

Please cite: Balci et al. Newt: a comprehensive web-based tool for viewing, constructing, and analyzing biological maps, Bioinf., 37(10), pp.1475-1477, 2021.

For any issues or bug reports, please contact us.

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